MYOB Exo · Shopify Payments reconciliation

Two systems. One source
of truth.

InSyncer lands every Shopify payout, fee and refund inside MYOB Exo, keyed to the original order. The data your finance team or Exo partner needs to reconcile, where they can actually use it.

Talk to us See how it works
Orders received today
Order #5021 · $189.00
Order #5022 · $64.50
Order #5023 · $249.00
Order #5024 · $112.00
+38 more orders
Shopify batches into a single deposit ↓
Payout #PLT-00842 12 Mar 2026
42 charges · 3 refunds
$12,480.52 AUD
Gross: $13,200.00
Fees: −$214.48
Refunds: −$505.00
Landed in Exo, keyed back to the originating order
1:1Every Shopify order linked
to its Exo order
All gatewaysShopify Payments, PayPal,
Afterpay, Klarna
ReconciledReconcile Shopify payouts
directly in MYOB Exo
DeliveredRolled out with
your Exo partner
The problem

Shopify doesn't speak MYOB Exo.
Your accounts team pays the price.

Shopify Payments batches dozens of transactions into a single bank deposit. Without the transaction-level data inside Exo, reconciliation falls to your team. Every single week.

One deposit. Dozens of orders.

Every Shopify Payments deposit bundles multiple orders, refunds and gateway fees into a single lump sum. No breakdown visible in your bank feed.

Manual matching every week.

Your accounts team cross-references Shopify reports against Exo by hand. Slow, prone to error, doesn't scale.

Fees and refunds buried.

Gateway fees, partial refunds and chargeback adjustments sit inside Shopify payout reports, not where your accountants need them.

How it works

The data layer between
Shopify and MYOB Exo.

InSyncer sits between Shopify and Exo, lifting every payment, fee and payout batch into a custom table schema inside Exo. Keyed to the original order, ready for your reconciliation tool.

Shopify

Shopify PaymentsVisa, Mastercard, Amex
PayPalDirect checkout
AfterpayBuy now, pay later
Klarnavia Airwallex

InSyncer

Sync all transactionsMatched to Exo sales orders
Identify gatewayPayments, PayPal, Afterpay…
Push payout dataFull batch + fee breakdown

MYOB Exo

Payout batch headersDate, total, status, gateway
Charge and refund rowsGross, fee, net per transaction

Recon tool

Built by your Exo partnerPosts payments, allocates against invoices
What InSyncer handles

InSyncer handles the Shopify-to-Exo data sync. The reconciliation tool inside Exo is a separate piece of work that your Exo partner will build.

End-to-end flow

From Shopify sale to
reconciled bank deposit.

Every payout is automatically broken down, matched against invoices, and reconciled against the bank feed.

Step 1 — Customer pays on Shopify
Orders placed via Shopify Payments
Order #5021 · $189.00 Order #5022 · $64.50 Order #5023 · $249.00 +39 more orders
Step 2 — Shopify batches into a payout
Payout #PLT-00842 12 Mar 2026
42 charges · 3 refunds · one deposit to bank
$12,480.52 AUD
Gross: $13,200.00
Fees: −$214.48
Refunds: −$505.00
Step 3 — InSyncer sends it all to Exo
Payout batch, transactions, fees — automated
Payout batch header · date, amount, status
42 charge transactions · gross, fee, net per order
3 refund transactions · linked to original orders
Step 4 — Three-way match in Exo
Bank feed ↔ Payout batch ↔ Debtor invoices
✓Bank deposit$12,480.52
✓Shopify payout #PLT-00842$12,480.52
✓Sum of 45 transactions$12,480.52
Batch reconciled
All amounts match to the cent · one click to finalise
Get started

Want to see it running?

Tell us about your setup and we'll walk you through what InSyncer can do for your reconciliation workflow.

We'll get back to you within one business day.

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